Turbulent flows in active matter

The power of toy models and effective theories in describing and understanding emergent phenomena is illustrated by a 2012 study of the turbulence in the fluid flow of swimming bacteria.

Meso-scale turbulence in living fluids

Henricus H. Wensink, Jörn Dunkel, Sebastian Heidenreich, Knut Drescher, Raymond E. Goldstein, Hartmut Löwen, and Julia M. Yeomans

They found that a qualitative and quantitative description of observations of flow patterns, energy spectra, and velocity structure functions was given by a toy model of self-propelled rods (similar to that proposed for flocking of birds) and a minimal continuum model for incompressible flow. For the toy model, they presented a phase diagram (shown below) as a function of the volume fraction of the fluid occupied by rods and the aspect ratio of the rods. There were six distinct phases: dilute state (D), jamming (J), swarming (S), bionematic (B), turbulent (T), and laned (L). The turbulent state occurs for high filling fractions and intermediate aspect ratios, covering typical values for bacteria.

The horizontal axis is the volume fraction, going from 0 to 1.

The figure below compares the experimental data (top right) for the vorticity and the toy model (lower left) and the continuum model (lower right).

Regarding this work, Tom McLeish highlighted the importance of the identification of the relevant mesoscopic scale and the power of toy models and effective theories in the following beautiful commentary taken from his book, The Poetry and Music of Science

“Individual ‘bacteria’ are represented in this simulation by simple rod-like structures that possess just the two properties of mutual repulsion, and the exertion of a constant swimming force along their own length. The rest is simply calculation of the consequences. No more detailed account than this is taken of the complexities within a bacterium. It is somewhat astonishing that a model of the intermediate elemental structures, on such parsimonious lines, is able to reproduce the complex features of the emergent flow structure. 

Impossible to deduce inductively the salient features of the underlying physics from the fluid flow alone—creative imagination and a theoretical scalpel are required: the first to create a sufficient model of reality at the underlying and unseen scale; the second to whittle away at its rough and over-ornate edges until what is left is the streamlined and necessary model. To ‘understand’ the turbulent fluid is to have identified the scale and structure of its origins. To look too closely is to be confused with unnecessary small detail, too coarsely and there is simply an echo of unexplained patterns.”