Wednesday, August 5, 2026

The emergence of hadronic matter from interacting quarks and gluons

 A characteristic of emergent phenomena is how novel and complex properties can emerge from apparently simple laws. Quantum ChromoDynamics (QCD) describes the interaction of quarks and gluons. The classical Lagrangian is remarkably simple.

It has an SU(3) local gauge symmetry and the A_v^mu are the associated gauge fields (gluons).

The quarks are fermions with fractional electrical charge. The only parameters in the theory are the coupling constant g_s, which describes the self-interaction of the gluons, and the masses of the quarks, m_f. The gluons are massless. The Lagrangian has chiral symmetry, which transforms quarks with left-handed symmetry into right-handed.

Frank Wilczek states that QCD "is conceptually simple. Its realisation in nature, however, is usually very complex. But not always."

Hadronic matter (nucleons and mesons) has properties that are qualitatively different from its components (interacting quarks and gluons). In other words, it is emergent.

In hadronic matter, there are no fractionally charged particles or massless bosons. Chiral symmetry is broken. (This is intimately connected to the confinement of quarks). Hadrons do not come in pairs with opposite parity and equal energy.  

Although the underlying Lagrangian is simple, the spectrum of hadrons and their interactions is complex. There is a "zoo" of particles. (Aside: Most can be viewed as quasiparticles as they have a finite lifetime. But strictly speaking, most decay via the weak nuclear or electromagnetic interactions, which obviously is not in the QCD Lagrangian). This all comes from a single coupling constant!

The emergent state of hadronic matter only exists at "low" temperatures and densities. It "melts" at the high temperatures associated with the Big Bang, relativistic heavy ion colliders, or the high densities associated with neutron stars. But that and the associated phase diagram of QCD is another story...



Monday, August 3, 2026

Topology matters in condensed matter physics

Topology is the field of mathematics describing the properties of geometric objects that do not change when they are smoothly deformed. These properties only change in steps by cutting or gluing. Concepts in topology can be illustrated with everyday objects such as balls, doughnuts, coffee cups, and pretzels. For example, a doughnut can be gradually and smoothly deformed into the shape of a coffee mug (Figure 33). No ripping or cutting is required. In contrast, it is impossible to turn a ball into a doughnut without cutting a hole. The number of holes in an object is referred as a topological invariant. For a ball, doughnut, and the simplest pretzel these numbers are zero, one, and two, respectively. Topology is about qualitative differences not quantitative details such as distances, angles, and sizes.

Figure 33. A doughnut can be smoothly deformed into a coffee cup. From the perspective of the mathematical field of topology all the objects above are identical.

In chapter 4 it was noted that in ordered states of matter, some properties are determined by topological defects, such as vortices in superconductors. These are topological objects in the following sense. In a superconductor, there is an electrical current circulating around a vortex and a magnetic field that passes through the centre of the vortex. The magnetic flux is equal to one unit or quantum of the magnetic flux. If the spatial distribution of the electrical current around the vortex is smoothly changed the total magnetic flux remains the same. Furthermore, it is not possible to smoothly deform the system in any way to make the vortex disappear. The magnetic flux associated with the vortex is a topological invariant.

Condensed matter physics is about qualitative difference: states of matter are qualitatively different from one another. Until the 1980s these differences were only associated with different types of symmetry, which in turn reflect the underlying ordering in the state. This chapter describes unanticipated discoveries of new states of matter that could not be described in terms of this traditional symmetry picture. But they can be described in terms of topology. These states exhibit macroscopic quantum effects, reminiscent of superconductors and superfluids. Understanding these states of matter involves venturing back into Flatland and also into some abstract mathematical spaces. Remarkably, these abstractions can be related to practical questions about international standards for electronic circuits.

An extract from Topology Matters, Chapter 8, Condensed Matter Physics: A Very Short Introduction 

Wednesday, July 29, 2026

Measuring the social, ethical, and political values of different AI models

I continue to enjoy reading my hard copy of The Economist every week. Occasionally, I post examples of insightful graphics presented in articles.

Here are some graphics that struck me recently. They are taken from a fascinating article. AI models’ values are very different from most people’s

The first figure shows a comparison of the answers given to the World Values Survey by different Large Language Models and people from different regions (cultures) of the world. The vertical axis goes from traditional values at the bottom to secular values at the top. The horizontal axis goes from survival (or communal) values on the left to self-expression on the right.

Note how the different cultures do not overlap. Furthermore, the LLMs are distant from almost everyone. Just a few are close to the English speaking world. 


The second graph compares answers to the VOTER survey of political questions. The horizontal and vertical axes correspond to Social and Economic issues respectively. Positive and negative values correspond to conservative and liberal respectively. Answers from LLMs are compared to a sample of Trump and Biden voters from the 2020 USA Presidential election. Note the clear political polarisation. Furthermore, the AI models are all liberal.


I offer no comments on whether any of this is good or bad. I do suggest two implications. First, extensive use of AI will tend to shift peoples values in a particular direction, just like media (music, TV, movies, art) does. Second, given the conflict of values with most people these biases will offend or concern many communities and increase the backlash against AI companies and its widespread adoption. Consequently, some will modify the training of their models so they align more with the values of vocal communities. Whether or not that is seen as a good thing, will depend on whether you think some of those values should be affirmed.

What do you think?

Friday, July 24, 2026

Macroscopic quantum effects in superconductors and superfluids

Quantisation of magnetic flux in a superconductor

Magnets and electrical currents produce magnetic fields, regions of space where other magnets and electrical wires experience a mechanical force. For a circle of wire in the presence of a magnetic field the magnetic flux is defined as the strength of the magnetic field passing through the circle multiplied by the area of the circle. A law of electromagnetism states that if the field varies with time, then a voltage is produced in the wire with a magnitude that is proportional to the rate at which the magnetic flux through the circle changes. This is the physics behind all electrical motors and electrical generators. In the everyday world magnetic flux can have any value and can be varied continuously by changing the strength of magnetic field. In the quantum world that is not the case. Magnetic flux is quantised.

In 1961, two experimental groups independently reported the first observation of a macroscopic quantum effect, the quantisation of the magnetic flux passing through a superconducting cylinder (Figure 30). One team was Bascom Deaver and William Fairbank and the other Robert Doll and Martin Nabauer. A tall thin cylinder made of tin was placed in a magnetic field and cooled down to a low enough temperature that it entered the superconducting state. The magnetic flux passing through the cylinder was then measured as the magnetic field was varied. The resulting graph has four noteworthy features. First, there are clear steps, showing that the magnetic flux has discrete values. In contrast, in the normal metallic state the graph was a straight line. Secondly, the magnitude of the steps was the same, to within about one per cent, suggesting quantisation of a single unit of magnetic flux. Thirdly, the value of this quantum of magnetic flux was equal to the value of h/2e. Thus, it was completely determined by the two fundamental constants, h and e, Planck’s constant and the charge on an electron, respectively. And fourthly, graphs with the same three features noted above were later observed in other superconducting materials and cylinders. This showed that flux quantisation is independent of details such as the chemical composition and dimensions of the cylinder. This flux quantisation is a macroscopic quantum effect. It is macroscopic because the system is macroscopic, and the magnetic flux is a macroscopic property. It is quantum as and the magnitude of the quantisation is determined by Planck’s constant.




                                                                       (b)


Figure 30. Quantisation of magnetic flux in a superconducting cylinder. (a) A tall thin cylinder of tin was placed in a magnetic field. (b) The graph shows the value of the magnetic flux passing through the cylinder as the magnetic field was varied. Note the step like structure, showing quantisation of the flux.

The quantum of magnetic flux is denoted Φ0 (= h/2e) and has the value 2.067833848...×10−15   tesla (metre)2. This number also determines the scale of quantum interference effects between two superconductors, as we will see shortly. The flux quantum is also relevant to vortices that form when some superconductors are placed in a magnetic field (Figure 20). A persistent electrical current flows around the vortex and the magnetic field penetrates the core of the vortex. It can also be shown, both theoretically and experimentally, that the magnetic flux associated with each vortex is exactly equal to one quantum of flux. Something similar happens in superfluids.

Macroscopic quantum effects in superfluids

When a cylinder containing a fluid is rotated about an axis passing down the centre of the cylinder the fluid will also rotate. The faster the cylinder is rotated the faster the fluid rotates. A physical quantity known as the circulation is proportional to the speed of rotation and the diameter of the cylinder. With a variable speed motor, the rotation speed can be continuously varied and in normal fluids the circulation has continuous values. But not in a superfluid, as shown in a beautiful experiment done by W.F. Vinen in 1961 using liquid 4He. He observed that when the liquid was cooled below the superfluid transition temperature that the circulation could only take on discrete values. Furthermore, these discrete values are multiples of h/M where h is Planck’s constant and M is the mass of one atom of helium. This value was predicted by Lars Onsager in 1949 who identified h/M with the circulation of a single vortex in the superfluid. This is another macroscopic quantum effect.

The quantisation of magnetic flux in superconductors and of circulation in superfluids showed that both superconductors and superfluids can be classified as quantum states of matter. The close similarity of these quantum phenomena, even though superconductivity occurs in solids and superfluidity in liquids. This indicates a deep underlying unity, demonstrated through the study of condensed matter physics. 

This is an extract from Chapter 7, Quantum Matter, in Condensed Matter Physics: A Very Short Introduction.

Tuesday, July 21, 2026

Rudolph Marcus (1923-2026): theoretical chemical physicist

Rudolph Marcus died last week. He was 102. There is a nice obituary in The New York Times. He was best known for his theory of electron transfer, for which he was the sole recipient of the Nobel Prize in Chemistry in 1992.

Although the theory was proposed for electron transfer in a polar solvent it applies to a wide range of other systems, where two quantum states are coupled to one another and to an environment. One example is for Forster transfer of excitons between molecules, which is central to photosynthesis.

I will give a physics perspective, based on a talk I gave in Slovenia back in 2013. Slides are here.

Basically, Marcus proposed an effective Hamiltonian for two diabatic states and calculated a transition rate in a limit that is relevant to most chemical contexts.

The Hamiltonian can be viewed as the spin-boson model, in which a two-level system is coupled to a bath of harmonic oscillators. 

[The dense book by Weiss on Quantum Dissipative Systems makes the connection explicit in detail. A more accessible treatment may be chapter 16 in the book Chemical Dynamics in Condensed Phases by Nitzan.]

The Hamiltonian is 

This defines a spectral density, which is important for quantum decoherence, but not so much here, except it defines a timescale that determines the classical limit, which Marcus assumed.


This can be used to define a quantity central to Marcus' theory, the reorganisation energy.


The transition rate between the two quantum states is given by

I consider this to be one of the most important equations in chemical physics, particularly for the understanding and design of functional materials.

Aside. Much of this is equivalent to Holstein's 1959 treatment of incoherent polaron transport (see Mahan, Many-body physics).

A key experiment by John R. Miller, Lidia T. Calcaterra and Gerhard L. Closs in 1984 showed how good the theory was and how its predictions were counter-intuitive. The authors considered a family of molecules that allowed them to tune epsilon, the energy difference between the two electronic states. [On the graph below epsilon = - Delta G].


The vertical scale is the reaction rate on a logarithmic scale. It varies by four orders of magnitude.

What is surprising? As stated at the Nobel prize award ceremony:

"The quadratic equation predicts that electron transfer reactions will occur more slowly the larger the driving force of the reaction is. This phenomenon received its own name, “the inverted region.” To a chemist, the phenomenon is just as unexpected as when a skier finds himself gliding more slowly down a slope the steeper it is."

The theory implies an important design principle for functional materials: if optimising functionality means maximising the reaction rate, then tune the energy difference epsilon to equal the reorganisation energy E_R.

The theory illustrates two important aspects of emergence: effective theories and universality. Many different systems can be described by the same theory. The environment may involve many degrees of freedom and its coupling to the system is characterised by many parameters (the M_alpha above). However, only one parameter matters, the reorganisation energy.

For Australians, there is some ambivalence about the way Marcus' name is often solely associated with electron transfer theory. We often refer to it as Marcus-Hush or Hush-Marcus theory because Noel Hush did similar work around the same time. Some of the history is recounted here by Ian Rae and Jeff Reimers. There are also subtle debates about whether the electron transfer is adiabatic or non-adiabatic.

My only personal interaction with Marcus was in 2011 when I visited the chemistry department at Caltech. Marcus kindly took me to lunch at the faculty club, along with his research group. Then he was 84 years old. He kept publishing papers until he died.

Tuesday, July 14, 2026

Philosophical perspectives on the emergence of molecular structure

 In philosophical discussions of emergence and reductionism in chemistry, molecular structure has received significant attention and debate. Sometimes molecular structure is used to justify strong emergence, i.e., that molecular cannot be predicted, even in principle, solely from quantum theory.

Primas was one of the first to claim that molecular structure could not be reduced to quantum physics. Consider the following statements.

“From a physical point of view the crucial point of a Born–Oppenheimer description is not a simplification of the mathematical problem, but the replacement of the basic theory by a related but qualitatively new one…

[the structure of benzene] does not exist in a full quantum-theoretical description since electrons and nuclei are entangled by Einstein-Podolsky–Rosen correlations. The concept of molecular structure does not follow from first principles - all molecules with the same empirical formula have the same Schrödinger equation, so that, at this level, the shape of a molecule as the main feature of molecular chemistry is simply not in evidence. In a quantum theoretical description the molecular shape emerges by abstracting from the actually existing Einstein-Podolsky–Rosen correlations between the electrons and the nuclei. Historically, the structure concept has been introduced into quantum chemistry by the so called Born-Oppenheimer approximation. But this terminology is misleading since the main issue is not an approximation, but the breaking of a holistic symmetry.

I have italicised claims that are contestable and that I will discuss further below.

Cartwright has given philosophical arguments as to why chemistry cannot be reduced to physics. In this context, she claims (pp. 106-7)

“The typical method of quantum-mechanical treatment of molecules begins with the Born–Oppenheimer approximation…

This approximation treats the atomic nucleus as a classical particle. But this fundamentally violates quantum mechanics which, following the Heisenberg uncertainty principle, maintains that we cannot have a simultaneous assignment of fixed positions and fixed momenta. The approximations that provide the reduction violate the very theory that the chemistry is being reduced to… the success of quantum chemistry relies fundamentally on assumptions that belong to classical chemistry.” 

This claim that the BOA violates the Heisenberg uncertainty principle was rebutted in an earlier post and discussed in more detail by Huggett et al. Nevertheless, Lombardi et al. are not satisfied by the rebuttal.

Hendry claimed molecular structure is evidence of strong emergence and/or downward causation. In a similar spirit, Ellis and Drossel argued that crystal structures in solid state physics are evidence of strong emergence. The arguments of Hendry have been criticised by Seifert. The arguments centre around the fact that the molecular structure is a classical entity and a concept that is imposed, whereas a logically self-consistent approach would treat both electrons and nuclei quantum mechanically. It is claimed that the existence of molecular structures is assumed and not derived in quantum chemistry calculations as they assume the Born-Oppenheimer approximation (BOA). 

Scerri responded to these arguments claiming that chemistry (particularly the concept of molecular structure) is irreducible to quantum physics. He claimed these arguments are not valid because they misunderstand the role of the BOA. It does not violate the uncertainty principle and in practice chemists can and do perform non-BOA approximations. 

Fortin et al. rejected the view that decoherence can explain isomerism, as decoherence does not resolve issues associated with the quantum measurement problem. 

Franklin and Seifert claim “the problem of molecular structure just is the quantum measurement problem.” This is debatable. Most molecular structures can be understood in terms of the nuclear probability density having a unique maximum and decoherence then is not relevant. Decoherence and the collapse of the nuclear wavefunction are only relevant in systems such as ammonia and stereoisomers in which there are molecular structures with equal energy and separated by high energy barriers.

I now respond to some of the contestable claims of Primas.

“electrons and nuclei are entangled by Einstein-Podolsky–Rosen correlations”

It is possible to quantify and calculate the amount of entanglement between electrons and nuclei in a specific quantum state. In an EPR state the entanglement is maximal. In the BOA wavefunction entanglement is present, but is absent in the crude BOA. The entanglement has been estimated in benzene and is very small. The only molecules where the entanglement may be significant are those, such as isomers, where there are two degenerate molecular structures and the overlap of the associated nuclear wavefunctions is small (i.e., the tunnel splitting is small). But then, in most chemical situations decoherence will wash out this entanglement.

“all molecules with the same empirical formula have the same Schrödinger equation, so that, at this level, the shape of a molecule as the main feature of molecular chemistry is simply not in evidence.”

This is the problem of isomers. It is resolved because isomers are present in the solution to the Schrödinger equation, as I argued earlier.

“the crucial point of a Born–Oppenheimer description is not a simplification of the mathematical problem, but the replacement of the basic theory by a related but qualitatively new one… the main issue is not an approximation, but the breaking of a holistic symmetry.”

This seems subjective to me. I see the BOA as just a well-justified approximation. The electrons and nuclei are treated differently because they are. They have vastly different masses and this affects how they can be treated in any solution to the full Hamiltonian. Nevertheless, the BOA is a quantum theory and the nuclei are described by a wavefunction.

As discussed earlier, for small molecules in practise it is no longer necessary to use the BOA and the electrons and nuclei can be treated on an equal footing. Molecular structure is present in solutions to the full Schrödinger equation.

I wonder if the objection to use of the BOA is any different to the use of approximations in other theories? For example, consider theoretical treatments of the motion of planets in the solar system. The effects of all the planets are not treated on an equal footing. The effect of other planets on a planet of interest are treated perturbatively.

In conclusion, the arguments that molecular structure is evidence of strong emergence are weak. Some confusion may partly arise from misinterpreting the significance of the following valid observations.

i. Molecular structures were first conjectured before quantum theory was proposed.

ii. The BOA was proposed to explain molecular structure from quantum theory.

iii. Today, almost all calculations of molecular structure assume BOA.

iv. Chemists talk about molecular structures largely in classical not quantum terms.

However, the scientific reality is that for small molecules their structure, can be understood, described, and calculated in purely quantum terms. Yet, that understanding provides a strong justification for the validity of the BOA and for the convenience of using classical language to describe molecular structure.

I stress that the weakness of the arguments for the strong emergence of molecular structure, does not mean that an emergent perspective is not relevant to chemistry. Molecular structure is emergent, when defined in terms of novelty. This leads to effective theories defined in terms of potential energy surfaces. Furthermore, as the next section argues chemistry exhibits novel properties, concepts, and theories that are not present in physics.

This post is extracted from Section 15, of my review article "Emergence: from physics to biology, sociology, and computer science."

Thursday, July 9, 2026

A new version of my review article on emergence

On the arXiv, I have posted a new version of my review article, Emergence: from physics to biology, sociology, and computer science.

I have added expanded sections on molecular structure, quantitative measures of causal emergence, and biological evolution.

There are also many minor additions and corrections. I hope the hyperlinked Table of Contents is helpful.

I welcome feedback and suggestions. I am sure there is much more to do.

The emergence of hadronic matter from interacting quarks and gluons

 A characteristic of emergent phenomena is how novel and complex properties can emerge from apparently simple laws. Quantum ChromoDynamics (...